The Genomics Data Analysis XSeries is an advanced series that will enable students to analyze and interpret data generated by modern genomics technology.
Using open source software, including R and Bioconductor, you will acquire skills to analyze and interpret genomic data.
This XSeries is perfect for those who seek advanced training in high-throughput technology data. Problem sets will require coding in the R language to ensure learners fully grasp and master key concepts. The final course investigates data analysis for several experimental protocols in genomics.
Perform RNA-Seq, ChIP-Seq, and DNA methylation data analyses, using open source software, including R and Bioconductor. We will explain how to perform the standard processing and normalization steps, starting with raw data, to get to the point where one can investigate relevant biological questions. [...]
Learn advanced approaches to genomic visualization, reproducible analysis, data architecture, and exploration of cloud-scale consortium-generated genomic data. In this course, we begin with approaches to visualization of genome-scale data, and provide tools to build interactive graphical interfaces to speed discovery and interpretation. Using knitr and rmarkdown as basic authoring [...]
The structure, annotation, normalization, and interpretation of genome scale assays. We begin with an introduction to the biology, explaining what we measure and why. Then we focus on the two main measurement technologies: next generation sequencing and microarrays. We then move on to describing how raw data and experimental [...]